2010年博士毕业于南开大学,2015年9月-2016年5月在澳大利亚格里菲斯大学访问。生物信息学与计算生物学,蛋白质结构与功能, 深度学习在生物信息学中的应用,3D基因组,单细胞数据科学等。
发表论文:
Journal
Wei H, Wang B, Yang J, Gao J*.RNA flexibility prediction with sequence profile and predicted solvent accessibility. IEEE-ACM Transactions on Computational Biology and Bioinformatics . 2019 Nov 28. doi: 10.1109/TCBB.2019.2956496
Zhang Zhaopeng, Ruan Jishou, Gao Jianzhao*, Wu Fang-Xiang*.Predicting essential proteins from protein-protein interactions using order statistics. Journal of Theoretical Biology, 2019 Jun 25. pii: S0022-5193(19)30257-7. doi: 10.1016/j.jtbi.2019.06.022
Mi P, Zhang QP, Zhang SH, Wang C, Zhang SZ, Fang YC, Gao JZ, Feng DF, Chen DY, Feng XZ. The effects of fluorene-9-bisphenol on female zebrafish (Danio rerio) reproductive and exploratory behaviors. Chemosphere 2019 Apr 25;228:398-411. doi: 10.1016/j.chemosphere.2019.04.170.
Gao J, Miao Z, Zhang Z, Wei H, Kurgan L.*,Prediction of Ion Channels and their Types from Protein Sequences: Comprehensive Review and Comparative Assessment. Current Drug Targets . 2019;20(5):579-592.
Gao J, Yang Y*, Zhou Y*. Grid-based prediction of torsion angle probabilities of protein backbone and its application to discrimination of protein intrinsic disorder regions and selection of model structures. BMC Bioinformatics. 2018;19(1):29.
Gao J, Wu Z, Hu G, Wang K, Song J, Joachimiak A*, Kurgan L.* Survey of predictors of propensity for protein production and crystallization with application to predict resolution of crystal structures.Current Protein & Peptide Science. 2018;19(2):200-210.
Yang Y, Gao J, Wang J, Heffernan R, Hanson J, Paliwal K, Zhou Y. Sixty-five years of the long march in protein secondary structure prediction: the final stretch? Brief Bioinform. 2018;19(3):482-494.
Gao J, Tao XW, Zhao J, Feng YM*, Cai YD*, Zhang N.* Computational Prediction of Protein Epsilon Lysine Acetylation Sites Based on a Feature Selection Method. Combinatorial Chemistry & High Throughput Screening. 2017;20(7):629-637.
Wang T, Zheng W, Wuyun Q, Wu Z, Ruan J, Hu G, Gao J*. PrAS: Prediction of amidation sites using multiple feature extraction. Computational Biology and Chemistry.2017;66:57-62.
Gao J, Yang Y*, Zhou Y*. Predicting the errors of predicted local backbone angles and non-local solvent-accessibilities of proteins by deep neural networks. Bioinformatics. 2016; 32(24):3768-3773.
Gao J, Cui W, Sheng Y, Ruan J*, Kurgan L*.PSIONplus: Accurate Sequence-Based Predictor of Ion Channels and Their Types, PLoS One, 2016;11(4):e0152964.
Zheng W, Ruan J, Hu G, Wang K, Hanlon M, Gao J*, Analysis of Conformational B-Cell Epitopes in the Antibody-Antigen Complex Using the Depth Function and the Convex Hull, PLoS One, 2015; 10(8):e0134835.
Zheng W, Zhang C, Ruan J, Gao J*, An ensemble method for prediction of conformational B-cell epitopes from antigen sequences, Computational Biology and Chemistry, 2014; 49, 51–58.
Gao J, Hu G, Wu Z, Ruan J, Shen S, Hanlon M, Wang K*, Improved Prediction of Protein Crystallization, Purification and Production Propensity Using Hybrid Sequence Representation, Current Bioinformatics, 2014; 9, 57-64.
Gao J, Zhang N*, Ruan J*, Prediction of protein modification sites of gamma-carboxylation using position specific scoring matrices based evolutionary information, Computational Biology and Chemistry, 2013; 47,215-220.
Wang K, Gao J, Shen S, Tuszynski J, Ruan J, Hu G*, An Accurate Method for Prediction of Protein-Ligand Binding Site on Protein Surface Using SVM and Statistical Depth Function, BioMed Research International, Article ID 409658, 7Pages, 2013.
Hu G, Gao J, Wang K*, Mizianty M, Ruan J, Kurgan L*, Finding Protein Targets for Small Biologically Relevant Ligands across Fold Space Using Inverse Ligand Binding Predictions, Structure, 2012; 20(11):1815-22.
Gao J*, Faragg E, Zhou Y, Ruan J, Kurgan L*, BEST: improved prediction of B-cell epitopes from antigen sequences, PLoS One, 2012; 7(6): e40104.
Wang K , Cui W , Hu G, Gao J, Wu Z, Qiu X, Ruan J,Feng Y,Qi Z, Shao Y, Tuszynski J, Computable features required to evaluate the efficacy of drugs and a universal algorithm to find optimally effective drug in a drug complex, PLoS One, 2012; 7(3):e33709.
Zhang H, Zhang T, Gao J, Ruan J, Shen S, Kurgan L*, Determination of protein folding kinetic types using sequence and predicted secondary structure and solvent accessibility, Amino Acids,2012; 42(1):271-83.
Chen K, Mizianty M, Gao J, Kurgan L*, A critical comparative assessment of predictions of protein binding sites for small organic compounds, Structure,2011;19(5):613-21.
Gao J, Zhang T, Zhang H, Shen S, Ruan J, Kurgan L*, Accurate prediction of protein folding rates from sequence and sequence-derived residue flexibility and solvent accessibility, PROTEINS: Structure, Function, and Bioinformatics,2010; 78(9):2114-30.
Book Chapter
Gao Jianzhao, Kurgan Lukasz*, Computational prediction of B cell epitopes from antigen sequences (Book chapter), Immunoinformatics (Second Edition), Methods in Molecular Biology (series Editor: John Walker), Humana Press. 2014; 1184:197-215. doi: 10.1007/978-1-4939-1115-8_11.